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Yes.
Only if the way that disable would be used would be different (i.e. disable a move vs disable whole pokemon), different moves would be disabled (disable if flamethrower vs disable if ember), or the target is different (disable Mewtwo if it uses taunt, but disable Darkrai instead if it uses dark void).clarify: it counts as two separate conditionals if there are multiple conditions under which one might want to disable?
Superbird is correct. A pokémon suffers no ill effects by being submerged unless it has open flames.If a non-aquatic non-Water Pokemon is submerged, does it take damage? What if it's weak to water (ground-type, specifically)?